NOTICE: You are viewing a page of the openwetware wiki. Our "dewikify" feature makes a wiki page appear as a normal web page. In April 2017, this feature will GO AWAY and this URL will redirect to the source URL on our wiki. We're sorry for the inconvenience.
Click here to visit our NEW WEBSITE
The content below is most likely out of date. We also have a new lean and mean openwetware area.

MMC2 annotation

EMBL A. gambiae MMC2 12k v1

Download this tab-delimited file of annotations based on the mapping of MMC2 reporters to the AgamP3.3 assembly/gene build using the VectorBase pipeline. All annotations are derived from the corresponding Ensembl gene(s) and transcript(s). When a microarray reporter (probe) corresponds to more than one gene, the corresponding annotations are joined with a vertical bar ("|"). Duplicate annotations (e.g. where two different transcipts contain the same domains) are removed.

If your existing data files contain ENSANGTnnnnnnnnnn reporter IDs, you will have to convert them to "gene-neutral" IDs (e.g. 123.4.5) using the this GAL file, before using the annotation file.

Warning: error found for reporter 64.1.1 (it is not spotted many times as the GAL file suggests) Maccallum 12:37, 6 March 2007 (EST)

To look up the current genome mapping of an MMC2 reporter, use a URL in the following style:

http://agambiae.vectorbase.org/Genome/FeatureView/?type=OligoProbe;id=1.2.3

replacing the "1.2.3" with your reporter ID.